github.com/apptainer/singularity@v3.1.1+incompatible/examples/legacy/2.2/contrib/r_python_julia.def (about)

     1  BootStrap: debootstrap
     2  OSVersion: trusty
     3  MirrorURL: http://us.archive.ubuntu.com/ubuntu/
     4  
     5  %runscript
     6  
     7  %post
     8  	sed -i 's/$/ universe/' /etc/apt/sources.list
     9  	locale-gen "en_US.UTF-8"
    10  	dpkg-reconfigure locales
    11  	export LANGUAGE="en_US.UTF-8"
    12  	echo 'LANGUAGE="en_US.UTF-8"' >> /etc/default/locale
    13  	echo 'LC_ALL="en_US.UTF-8"' >> /etc/default/locale
    14  	mkdir /Software
    15  	apt-get update
    16  	apt-get install -y build-essential cmake curl ed git libsm6 libxrender1 libfontconfig1 lsb-release nettle-dev python-setuptools ruby software-properties-common vim wget zlib1g-dev apt-transport-https libgtk-3-0 bzip2 gfortran gettext libcairo2-dev libgit2-dev
    17  	apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 51716619E084DAB9
    18  	echo "deb https://cloud.r-project.org/bin/linux/ubuntu trusty/" >> /etc/apt/sources.list
    19  	apt-get update
    20  	apt-get install -y r-base-dev
    21      # can add command to install desired R packages here
    22  	apt-get clean
    23  	cd /Software
    24  	wget http://repo.continuum.io/archive/Anaconda3-4.1.1-Linux-x86_64.sh
    25  	bash Anaconda3-4.1.1-Linux-x86_64.sh -b -p /Software/anaconda3
    26  	rm Anaconda3-4.1.1-Linux-x86_64.sh
    27  	export PATH="/Software/anaconda3/bin:$PATH"
    28  	conda update conda
    29  	conda update anaconda
    30  	git clone git://github.com/JuliaLang/julia.git julia-0.5
    31  	cd julia-0.5
    32  	git checkout release-0.5
    33  	make MARCH=x86-64
    34  	cd ..
    35  	export PATH="/Software/julia-0.5/bin:$PATH"
    36      # can add command to install desired julia packages here, remember to pre-compile!
    37  	sed -i 's|PATH=$PATH:/bin:/sbin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin|PATH="/Software/julia-0.5:/Software/anaconda3/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"|' /environment