github.com/biogo/biogo@v1.0.4/align/crsp_test.go (about) 1 // Copyright ©2011-2012 The bíogo Authors. All rights reserved. 2 // Use of this source code is governed by a BSD-style 3 // license that can be found in the LICENSE file. 4 5 package align 6 7 var crspFa = `>platypusX_curated [gene=crspx] [protein=mediator of RNA polymerase II transcription subunit 26] join(Contig8610:13667..13596,Contig6275:9957..9883,8367..6703) O.anatinus 8 atgacagcggctccggcctccccgcagcagatcagggaccggctgctgcaggccatctac 9 taccagagcaacATCCATAACATGGTGGCAGTGCTGGAGGTTATCTCCAGCTTGGAGAAA 10 TATCCCATTACCAAAGAGGCGCTGGAGGAGACGAGATTAGGTAAGCTCATCAACGATGTC 11 CGCAAAAAGACGAAGAACGAGGAGCTTGCCAAACGTGCCAAGAAGTTGTTGCGGAATTGG 12 CAGAAGCTGATCGAACCCGTCGCCCAGAATGAAGCGGTGCCTCGAGGATTGCCCAACCCA 13 GCCGGGTCGGCCAACGGCGGCGCTCACAACTGTCGGCAAGAGGGGTCGCCGGCTACGGTC 14 GCCGGCCCCAAACCGGCCAACGAGTTCAAGAACAGGAATGACATCCAGAAGCTGAACTCT 15 CCGAAAGCCGAGAAAGCGGGGAATCGGAAGAGGAAAGGTGACCACAGAGATGGGCACCAG 16 GGCCCACCTTCCAAAGTGTCCAAAGCCAGTCACGAACCGTTGCAAAACTCCTCTCCGCTC 17 CCGACCAACGGAATCGGGGGCAGCCCCGAAAGCTTTCCCAGTCCTCCGGAGGCGGGCACG 18 CTCCCGGGGCCCGAAGGCAGCTGGACCGACCTGGGCGAGAACGATAAACACAGCAAAATC 19 CCAGTCAACGCCGTGAGACCTCACACGAGTTCCCCCGGGCCCGGAAAACCTTCAAGCACT 20 TGCTCCCAGGGCAAGGCGGCGGGGCTTCAGCCGCTCGACAAGCCCGAAGAGGCCGCCGGG 21 CCGCACCAGCCCAAGAGCCCGCTCTGCTCCTTCAGCCCCCGGAACGCGCGACCCGAGACC 22 TCGGTCCGACAGCACAGTACGTGTGCGCCGAAGGGGTCGGTGCCCAGCCCGTCCCGGAGG 23 CCCCAGGTCCTGGACCCGAGCCGGGCAGTGTCCTCCCCTCCGCCGCCGGTGGCGACCAAA 24 AGACTGGAGGCCGGGCAGCAGCCGGGCCCCGAGGCATCTCAGCCCTGGCAGGAGCACCTG 25 TCTTCCGAAAGCCACCACCGGCACCCGGCCGGGACCCCGCTCCAGCCCCCGGCCCCGGGC 26 TGTAAGGTGAGCTTACCCCCCGGGGAGCCCCCAATGCTGCGGATCGGGTTTTCCCCAGAC 27 GCCGCCTCAAAAATGGACAGCGACGATGCCGCCTCGGGGTCAGACAGTAAAAAGAAGAAA 28 AGGTACCGGCCCAAAGACTACACGGTGAACTTGGAGGGACAGGTGGTGGAAGGGGGGGTG 29 AAGCCTGTAAGGTTAAAAGAGAGGAAGCTCACGTTCGATCCCATGACCGGGCAGATCAAG 30 CCTCTCACCCACAAAGAGTCCCTGCAGGTGGACATCCCTGCAGTCGCCGAGCAGCACAGG 31 ACAGAACCGGATCCGCAGGAGCAGAAATCCAACCTGCCGAGCCCTTTCGAGCAGACGAAC 32 TGGAAAGAGCTGTCCCGGAACGAGATCATTCAGTCCTATTTAAACAGACAGAGTAGTTTG 33 CTCTCCTCGTCGGGAGTACAGACCCCCGGGGCTCACTATTTCATGAATGAATATTTAAAG 34 CAGGAAGAGAGCACTAGACGGGAAGCTCGGAAAACTCACGTTCTTGTGCCGGACAGTAGA 35 GCTGCAGATCTGCCCGGGGTCAGTAGAGAGGTCACGGGTGACGACCTCAACAGAATACAG 36 GAGGGTCACTGGCCGGGTGTGAACGGTTGTTACGATACACAGGGTAATTGGTATGATTGG 37 ACTCAGTGCATATCTTTAGATCCACACGGCGACGATGGGAAATTGAACGTCCTACCTTAC 38 GTCTGTCTAGAC 39 >platypusY_curated [gene=crspy] [protein=mediator of RNA polymerase II transcription subunit 26] join(1..72=Contig26_6-27:414..343,73..147=Contig24_6-24:2521..2595,148..1797=Contig26_6-36:459..2108)) O.anatinus 40 ATGACTGCGGATCCGGCCTCCCCGCTGCGGATAAGGGACCGACTGCTTCAGGCCATCGAC 41 CCCGAGAGCAACATCCATAACCTGGTGGCTGTTTTGGAAGTTATCAGTAGCTTGGAGAAA 42 TATCCCATTACCAAAGAGGCACTTGAGGAAACAAGATTAGGGAAACTCATCAACGATGTA 43 AGAAAGAAGACAAGAAATGAAGAGCTTGCCAAACGAGCCAAGAAATTGCTGCGAAGTTGG 44 CAAAAATTAATTGAACCTGTAACATCTGAGCCGGTGCCCCACTTATCAAATCCACATGGA 45 TCAGCCAACAGTGGTGCTCCTAACTGTAGGCAAGATATGTTACCTACTACACTTGCTGGT 46 TCAAAGTTGAAAAGCATGAATGCCATCCCAGAAGTAAGCACCCCAAAATCTGTAAAAGTG 47 AGAAATAAGGAAAAAAAAATTGTTCCAAGAGAAGGACATCAAAGCACTCCTTCCAAAGTA 48 TCTAAAGCCAACTCTGAGTCATTACAAAGCTCTTTTCCCAGTCCAACTACTGGGATCAGA 49 GGAAACTCTGAGAGTTTTCCCAGTTCTCTCGACTTCAAGATGCGCCCAGACTCTGAAAAC 50 CTCAGGACGGAACGTAGTGAAAATGATAAGTATAGCAAAATACCAGTAAATGCTGTGAAA 51 CCTCAGCCAAGGTCTCCAGGAATTTTAAAGTGTACAAGCACTTCTCCACAGTTTAGGGCT 52 GCAGTACTTCAGCAACCTGATAATATAGAAGAAACCACAGGGCAGCAGCAAACCAGAAAT 53 CTGTGTTCATTTAGTCCTACGAATTTAAAAAATGAAACATTTGTCCGACAACAGGATGTC 54 TGTCATGTGAAGCAGTCAATGGCCAATCTTTCGCAAAGATCACAGGTTCCAGGCCTTTCC 55 CAGGTGCTAGCCTTGTCCCCACCTCTAATTTTACTTCCATCAATGGCTCCTAAGGCAGTA 56 AAATTACTGGAAACTTCCCCTCAGTCGGGAACTGTTACAACTCAACCCTGTCGGGAATGT 57 GTGTCTTCTGAAAATTTCCTTTGCCATTCGGAACAACTACCTTTCCAGAGCACATCTCCC 58 AACTTTGAGGTCAGTTTTCATCCTGAAGAATCACAATATGGGTTTTCCCCAGGTGCTATA 59 AAAGTGGACACTGTTGATTCTCCCTCAGAACCAGCCAATAAAAAGAAAAAAAGGTACAGC 60 TCTAGAGATTATTTAATGAATTTAGATGAACTAGTGAGAGAAGGGGGTCTTAAACCTGTA 61 AGATTAAAAGAAAGGAAGCTTACATTTGATCCAATGACAAGACGAATCAAGCCCCTAATG 62 CAGAAGGACTCTTCACAGAGTGATATCCCCGCACCTATTGAACAGCCTAGAGTGGAAAGG 63 CAGGAGCAAAAAAACATTCTGCACAATCCATTTGAACAAGCAAATTGGAAAGAACTGTCC 64 AGAAATGAAATGATTCAGACCTATTTCAACCGACAGAATAGTCTGCTTTCCACTTCAGGC 65 ATACAAACCCCAGGAGCTCATTATTTTATGAGTGAACATTTGAAAAGGGAAGAAAACATT 66 AGAAAAGAAACTAGAATGACTCATGCGCAGATATCAAAGAGCATACCCACAGACCCACCT 67 GGCCTCAATAGAGAGGTTACAAGCAATGATCTACGCAGCTTATGGGAATTTTACTGGCCA 68 GGTGTGAATGGTTGTTATGATACACAGGGTAATTGGTATAATTGGACACAGTGCATATCT 69 GCAGATCCACATGGTGCTGACAGTAGATTGAATATTTTACCTTATGTCTGCCTAGAC 70 `