github.com/biogo/biogo@v1.0.4/io/seqio/alignio/data_test.go (about) 1 package alignio 2 3 var ( 4 fa = `>AK1H_ECOLI/114-431 DESCRIPTION HERE 5 CPDSINAALICRGEKMSIAIMAGVLEARGH-N--VTVIDPVEKLLAVG-HYLESTVDIAE 6 STRRIAASRIP------A-DHMVLMAGFTAGN-EKGELVVLGRNGSDYSAAVLAACLRAD 7 CCEIWTDVNGVYTCDP-------------RQVPDARLLKSMSYQEAMELSY--FGAKVLH 8 PRTITPIAQFQIPCLIKNTGNPQAPGTL-IG--ASRDEDELP----VKGISNLN------ 9 NMAMFSVSGP-GMKGMVGMAARVFAAMS-------RARISVVLITQSSSEYSISFCVPQS 10 DCVRAERAMLEEFY-----LELKEGLLEPLAVAERLAIISV-VGDGLRTLRGISAKF--- 11 ---FAALARANINIVAIA 12 >AKH_HAEIN 114-431 13 -----------------VEDAVKATIDCRGEKLSIAMMKAWFEARGY-S--VHIVDPVKQ 14 LLAKG-GYLESSVEIEESTKRVDAANIA--K-DKVVLMAGF---TAGNEKGELVLLGRNG 15 SDYSAAC-----------------LAACLGASVCEIWTDVDGVYTCDP--RLVPDARLLP 16 TLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSI-ID--GNVKSESL 17 Q----VKGITNLDNLAMFNVSGPGMQGM---VGMASRVFSAMSGAGISVILITQSSSEYS 18 ---ISFCVPVKSAEVAKTVLETEFA-----NELNEHQLEPIEVIKDLSIISV-VGDGMKQ 19 AKGIAARF------FSALAQANISIVAIA 20 >AKH1_MAIZE/117-440 21 -----------------ATESFSDFVVGHGELWSAQMLSYAIQKSGT-P--CSWMDTREV 22 LVVNPSGANQVDPDYLESEKRLEKWFSRC-P-AETIIATGF---IASTPENIPTTLKRDG 23 SDFSAAI-----------------IGSLVKARQVTIWTDVDGVFSADP--RKVSEAVILS 24 TLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNTSAPGTM-IC--QQPANENG 25 DLEACVKAFATIDKLALVNVEGTGMAGV---PGTANAIFGAVKDVGANVIMISQASSEHS 26 ---VCFAVPEKEVALVSAALHARFR-----EALAAGRLSKVEVIHNCSILAT-VGLRMAS 27 TPGVSATL------FDALAKANINVRAIA 28 >AK2H_ECOLI/112-431 29 -----------------INDAVYAEVVGHGEVWSARLMSAVLNQQG-----LPAAWLDAR 30 EFLRAERAAQPQVDEGLSYPLLQQLLVQH-P-GKRLVVTGF---ISRNNAGETVLLGRNG 31 SDYSATQ-----------------IGALAGVSRVTIWSDVAGVYSADP--RKVKDACLLP 32 LLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLASGTGARI 33 VTSHDDVCLI-EFQVPASQDFKLAHKEI--DQILKRAQVRPLAVGVHNDRQLLQFCYTSE 34 VADSALKILDEAG---------LPGELRLRQGLALVAMVGAGVTRNPLHCHRFWQQLKGQ 35 PVEFTWQSDDGISLVAVL 36 >AK1_BACSU/66-374 37 -----------------ISPREQDLLLSCGETISSVVFTSMLLDNGVKA--AALTGAQAG 38 FLTNDQHTNAKIIEMKPER--LFSVLAN----HDAVVVAGF---QGATEKGDTTTIGRGG 39 SDTSAAA-----------------LGAAVDAEYIDIFTDVEGVMTADP--RVVENAKPLP 40 VVTYTEICNLAYQGAKVISPRAVEIAMQAKVPIRVRSTYS-NDKGTLVTSHHSSKVGSDV 41 FERLITGIAH-VKDVTQFKVPAKIGQYN-----VQTEVFKAMANAGISVDFFNITPSEIV 42 YTVAGNKTETAQR------------ILMDMGYDPMVTRNCAKVSAVGAGIMGVPGVTSKI 43 ------VSALSEKEIPILQSA 44 >AK2_BACST/63-370 45 -----------------KRE--MDMLLSTGEQVSIALLAMSLHEKGYKA--VSLTGWQAG 46 ITTEEMHGNARIMNIDTT--RIRRCLDE----GAIVIVAGF---QGVTETGEITTLGRGG 47 SDTTAVA-----------------LAAALKAEKCDIYTDVTGVFTTDP--RYVKTARKIK 48 EISYDEMLELANLGAGVLHPRAVEFAKNYEVPLEVRSSME-NERGTMVK--EEVSMEQHL 49 IVRGIAFEDQ-VTRVTVVGIEKYLQSVA--------TIFTALANRGINVDIIIQNA---- 50 ----------------TNSETAS--VSFSIRTEDLPETLQVLQ-------------ALEG 51 ADVHYESGLAKVSI-VGSGMISNPGVAARV------FEVLADQGIEIKMVS 52 >AK2_BACSU/63-373 53 -----------------KRE--MDMLLATGEQVTISLLSMALQEKGYDA--VSYTGWQAG 54 IRTEAIHGNARITDIDTS--VLADQLEK----GKIVIVAGF---QGMTEDCEITTLGRGG 55 SDTTAVA-----------------LAAALKVDKCDIYTDVPGVFTTDP--RYVKSARKLE 56 GISYDEMLELANLGAGVLHPRAVEFAKNYQVPLEVRSSTE-TEAGTLIE--EESSMEQNL 57 IVRGIAFEDQ-ITRVTIYGLTSGLTTLS--------TIFTTLAKRNINVDIIIQTQ---- 58 ----------------AEDKTG---ISFSVKTEDADQTVAVLEEYK---------DALEF 59 EKIETESKLAKVSI-VGSGMVSNPGVAAEM------FAVLAQKNILIKMVS 60 >AKAB_CORFL/63-379 61 -----------------ARE--MDMLLTAGERISNALVAMAIESLGAEA--QSFTGSQAG 62 VLTTERHGNARIVDVTPG--RVREALDE----GKICIVAGF--QGVNKETRDVTTLGRGG 63 SDTTAVA-----------------LAAALNADVCEIYSDVDGVYTADP--RIVPNAQKLE 64 KLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAGSMEDIPVEEA 65 VLTGVATDKS-EAKVTVLGISDKPGEAA--------KVFRALADAEINIDMVLQNV---- 66 ----------------SSVEDGTTDITFTCPRADGRRAMEILKKLQ---------VQGNW 67 TNVLYDDQVDKVSL-VGAGMKSHPGVTAEF------MEALRDVNVNIELIS 68 >AKAB_MYCSM/63-379 69 -----------------PRE--MDMLLTAGERISNALVAMAIESLGAQA--RSFTGSQAG 70 VITTGTHGNAKIIDVTPG--RLRDALDE----GQIVLVAGF--QGVSQDSKDVTTLGRGG 71 SDTTAVA-----------------VAAALDADVCEIYTDVDGIFTADP--RIVPNARHLD 72 TVSFEEMLEMAACGAKVLMLRCVEYARRYNVPIHVRSSYS-DKPGTIVKGSIEDIPMEDA 73 ILTGVAHDRS-EAKVTVVGLPDVPGYAA--------KVFRAVAEADVNIDMVLQNI---- 74 ----------------SKIEDGKTDITFTCARDNGPRAVEKLSALK---------SEIGF 75 SQVLYDDHIGKVSL-IGAGMRSHPGVTATF------CEALAEAGINIDLIS 76 >AK3_ECOLI/106-407 77 -----------------TSPALTDELVSHGELMSTLLFVEILRERD--V--QAQWFDVRK 78 VMRTNDRFGRAEPDIAALAELAALQLLPR-LNEGLVITQGF---IGSENKGRTTTLGRGG 79 SDYTAAL-----------------LAEALHASRVDIWTDVPGIYTTDP--RVVSAAKRID 80 EIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRA 81 LAL--RRNQT-LLTLHSLNMLHSRGFLA--------EVFGILARHNISVDLITTSEVSVA 82 LTLDTTGSTSTG----------DTLLTQSLLMELSALCRVEVEEGLALVALIG------- 83 ---NDLSKACGVGKEVF 84 >AK_YEAST/134-472 A COMMENT FOR YEAST 85 -----------------VSSRTVDLVMSCGEKLSCLFMTALCNDRGCKAKYVDLSHIVPS 86 DFSASALDNSFYTFLVQALKEKLAPFVSA-KERIVPVFTGF---FGLVPTGLLNGVGRGY 87 TDLCAAL-----------------IAVAVNADELQVWKEVDGIFTADP--RKVPEARLLD 88 SVTPEEASELTYYGSEVIHPFTMEQVIRAKIPIRIKNVQNPLGNGTIIYPDNVAKKGEST 89 PPHPPENLSS----SFYEKRKRGATAITTKN----DIFVINIHSNKKTLSHGFLAQIFTI 90 LDKYKLVVDLISTSEVHVSMALPIPDADS-LKSLRQAEEKLRILGSVDITKKLSIVSLVG 91 KHMKQYIGIAG---TMFTTLAEEGINIEMIS 92 ` 93 fq = `@FC12044_91407_8_200_406_24 94 GTTAGCTCCCACCTTAAGATGTTTA 95 +FC12044_91407_8_200_406_24 96 SXXTXXXXXXXXXTTSUXSSXKTMQ 97 @FC12044_91407_8_200_720_610 98 CTCTGTGGCACCCCATCCCTCACTT 99 +FC12044_91407_8_200_720_610 100 OXXXXXXXXXXXXXXXXXTSXQTXU 101 @FC12044_91407_8_200_345_133 102 GATTTTTTAACAATAAACGTACATA 103 +FC12044_91407_8_200_345_133 104 OQTOOSFORTFFFIIOFFFFFFFFF 105 @FC12044_91407_8_200_106_131 106 GTTGCCCAGGCTCGTCTTGAACTCC 107 +FC12044_91407_8_200_106_131 108 XXXXXXXXXXXXXXSXXXXISTXQS 109 @FC12044_91407_8_200_916_471 110 TGATTGAAGGTAGGGTAGCATACTG 111 +FC12044_91407_8_200_916_471 112 XXXXXXXXXXXXXXXUXXUSXXTXW 113 @FC12044_91407_8_200_57_85 114 GCTCCAATAGCGCAGAGGAAACCTG 115 +FC12044_91407_8_200_57_85 116 XFXMXSXXSXXXOSQROOSROFQIQ 117 @FC12044_91407_8_200_10_437 118 GCTGCTTGGGAGGCTGAGGCAGGAG 119 +FC12044_91407_8_200_10_437 120 USXSXXXXXXUXXXSXQXXUQXXKS 121 @FC12044_91407_8_200_154_436 122 AGACCTTTGGATACAATGAACGACT 123 +FC12044_91407_8_200_154_436 124 MKKMQTSRXMSQTOMRFOOIFFFFF 125 @FC12044_91407_8_200_336_64 126 AGGGAATTTTAGAGGAGGGCTGCCG 127 +FC12044_91407_8_200_336_64 128 STQMOSXSXSQXQXXKXXXKFXFFK 129 @FC12044_91407_8_200_620_233 130 TCTCCATGTTGGTCAGGCTGGTCTC 131 +FC12044_91407_8_200_620_233 132 XXXXXXXXXXXXXXXXXXXXXSXSW 133 @FC12044_91407_8_200_902_349 134 TGAACGTCGAGACGCAAGGCCCGCC 135 +FC12044_91407_8_200_902_349 136 XMXSSXMXXSXQSXTSQXFKSKTOF 137 @FC12044_91407_8_200_40_618 138 CTGTCCCCACGGCGGGGGGGCCTGG 139 +FC12044_91407_8_200_40_618 140 TXXXXSXXXXXXXXXXXXXRKFOXS 141 @FC12044_91407_8_200_83_511 142 GATGTACTCTTACACCCAGACTTTG 143 +FC12044_91407_8_200_83_511 144 SOXXXXXUXXXXXXQKQKKROOQSU 145 @FC12044_91407_8_200_76_246 146 TCAAGGGTGGATCTTGGCTCCCAGT 147 +FC12044_91407_8_200_76_246 148 XTXTUXXXXXRXXXTXXSUXSRFXQ 149 @FC12044_91407_8_200_303_427 150 TTGCGACAGAGTTTTGCTCTTGTCC 151 +FC12044_91407_8_200_303_427 152 XXQROXXXXIXFQXXXOIQSSXUFF 153 @FC12044_91407_8_200_31_299 154 TCTGCTCCAGCTCCAAGACGCCGCC 155 +FC12044_91407_8_200_31_299 156 XRXTSXXXRXXSXQQOXQTSQSXKQ 157 @FC12044_91407_8_200_553_135 158 TACGGAGCCGCGGGCGGGAAAGGCG 159 +FC12044_91407_8_200_553_135 160 XSQQXXXXXXXXXXSXXMFFQXTKU 161 @FC12044_91407_8_200_139_74 162 CCTCCCAGGTTCAAGCGATTATCCT 163 +FC12044_91407_8_200_139_74 164 RMXUSXTXXQXXQUXXXSQISISSO 165 @FC12044_91407_8_200_108_33 166 GTCATGGCGGCCCGCGCGGGGAGCG 167 +FC12044_91407_8_200_108_33 168 OOOSSXXSXXOMKMOFMKFOKFFFF 169 @FC12044_91407_8_200_980_965 170 ACAGTGGGTTCTTAAAGAAGAGTCG 171 +FC12044_91407_8_200_980_965 172 TOSSRXXXSSMSXMOMXIRXOXFFS 173 @FC12044_91407_8_200_981_857 174 AACGAGGGGCGCGACTTGACCTTGG 175 +FC12044_91407_8_200_981_857 176 RXMSSXXXXSXQXQXFSXQFQKMXS 177 @FC12044_91407_8_200_8_865 178 TTTCCCACCCCAGGAAGCCTTGGAC 179 +FC12044_91407_8_200_8_865 180 XXXFKOROMKOORMIMRIIKKORFF 181 @FC12044_91407_8_200_292_484 182 TCAGCCTCCGTGCCCAGCCCACTCC 183 +FC12044_91407_8_200_292_484 184 XQXOSXXXXXUXXXXIXXXXQTOXF 185 @FC12044_91407_8_200_675_16 186 CTCGGGAGGCTGAGGCAGGGGGGTT 187 +FC12044_91407_8_200_675_16 188 OXTXXXSXXQXXOXXKMXXMXOKQF 189 @FC12044_91407_8_200_285_136 190 CCAAATCTTGAATTGTAGCTCCCCT 191 +FC12044_91407_8_200_285_136 192 OSXOQXXXXXSXXUXXTXXXXTRMS 193 ` 194 )