github.com/gopherd/gonum@v0.0.4/mat/cholesky_test.go (about)

     1  // Copyright ©2013 The Gonum Authors. All rights reserved.
     2  // Use of this source code is governed by a BSD-style
     3  // license that can be found in the LICENSE file.
     4  
     5  package mat
     6  
     7  import (
     8  	"fmt"
     9  	"math"
    10  	"strconv"
    11  	"testing"
    12  
    13  	"math/rand"
    14  
    15  	"github.com/gopherd/gonum/floats/scalar"
    16  )
    17  
    18  func TestCholesky(t *testing.T) {
    19  	t.Parallel()
    20  	for _, test := range []struct {
    21  		a *SymDense
    22  
    23  		cond   float64
    24  		want   *TriDense
    25  		posdef bool
    26  	}{
    27  		{
    28  			a: NewSymDense(3, []float64{
    29  				4, 1, 1,
    30  				0, 2, 3,
    31  				0, 0, 6,
    32  			}),
    33  			cond: 37,
    34  			want: NewTriDense(3, true, []float64{
    35  				2, 0.5, 0.5,
    36  				0, 1.3228756555322954, 2.0788046015507495,
    37  				0, 0, 1.195228609334394,
    38  			}),
    39  			posdef: true,
    40  		},
    41  	} {
    42  		_, n := test.a.Dims()
    43  		for _, chol := range []*Cholesky{
    44  			{},
    45  			{chol: NewTriDense(n-1, true, nil)},
    46  			{chol: NewTriDense(n, true, nil)},
    47  			{chol: NewTriDense(n+1, true, nil)},
    48  		} {
    49  			ok := chol.Factorize(test.a)
    50  			if ok != test.posdef {
    51  				t.Errorf("unexpected return from Cholesky factorization: got: ok=%t want: ok=%t", ok, test.posdef)
    52  			}
    53  			fc := DenseCopyOf(chol.chol)
    54  			if !Equal(fc, test.want) {
    55  				t.Error("incorrect Cholesky factorization")
    56  			}
    57  			if math.Abs(test.cond-chol.cond) > 1e-13 {
    58  				t.Errorf("Condition number mismatch: Want %v, got %v", test.cond, chol.cond)
    59  			}
    60  			var U TriDense
    61  			chol.UTo(&U)
    62  			aCopy := DenseCopyOf(test.a)
    63  			var a Dense
    64  			a.Mul(U.TTri(), &U)
    65  			if !EqualApprox(&a, aCopy, 1e-14) {
    66  				t.Error("unexpected Cholesky factor product")
    67  			}
    68  			var L TriDense
    69  			chol.LTo(&L)
    70  			a.Mul(&L, L.TTri())
    71  			if !EqualApprox(&a, aCopy, 1e-14) {
    72  				t.Error("unexpected Cholesky factor product")
    73  			}
    74  		}
    75  	}
    76  }
    77  
    78  func TestCholeskyAt(t *testing.T) {
    79  	t.Parallel()
    80  	for _, test := range []*SymDense{
    81  		NewSymDense(3, []float64{
    82  			53, 59, 37,
    83  			59, 83, 71,
    84  			37, 71, 101,
    85  		}),
    86  	} {
    87  		var chol Cholesky
    88  		ok := chol.Factorize(test)
    89  		if !ok {
    90  			t.Fatalf("Matrix not positive definite")
    91  		}
    92  		n := test.SymmetricDim()
    93  		cn := chol.SymmetricDim()
    94  		if cn != n {
    95  			t.Errorf("Cholesky size does not match. Got %d, want %d", cn, n)
    96  		}
    97  		for i := 0; i < n; i++ {
    98  			for j := 0; j < n; j++ {
    99  				got := chol.At(i, j)
   100  				want := test.At(i, j)
   101  				if math.Abs(got-want) > 1e-12 {
   102  					t.Errorf("Cholesky at does not match at %d, %d. Got %v, want %v", i, j, got, want)
   103  				}
   104  			}
   105  		}
   106  	}
   107  }
   108  
   109  func TestCholeskySolveTo(t *testing.T) {
   110  	t.Parallel()
   111  	for _, test := range []struct {
   112  		a   *SymDense
   113  		b   *Dense
   114  		ans *Dense
   115  	}{
   116  		{
   117  			a: NewSymDense(2, []float64{
   118  				1, 0,
   119  				0, 1,
   120  			}),
   121  			b:   NewDense(2, 1, []float64{5, 6}),
   122  			ans: NewDense(2, 1, []float64{5, 6}),
   123  		},
   124  		{
   125  			a: NewSymDense(3, []float64{
   126  				53, 59, 37,
   127  				0, 83, 71,
   128  				37, 71, 101,
   129  			}),
   130  			b:   NewDense(3, 1, []float64{5, 6, 7}),
   131  			ans: NewDense(3, 1, []float64{0.20745069393718094, -0.17421475529583694, 0.11577794010226464}),
   132  		},
   133  	} {
   134  		var chol Cholesky
   135  		ok := chol.Factorize(test.a)
   136  		if !ok {
   137  			t.Fatal("unexpected Cholesky factorization failure: not positive definite")
   138  		}
   139  
   140  		var x Dense
   141  		err := chol.SolveTo(&x, test.b)
   142  		if err != nil {
   143  			t.Errorf("unexpected error from Cholesky solve: %v", err)
   144  		}
   145  		if !EqualApprox(&x, test.ans, 1e-12) {
   146  			t.Error("incorrect Cholesky solve solution")
   147  		}
   148  
   149  		var ans Dense
   150  		ans.Mul(test.a, &x)
   151  		if !EqualApprox(&ans, test.b, 1e-12) {
   152  			t.Error("incorrect Cholesky solve solution product")
   153  		}
   154  	}
   155  }
   156  
   157  func TestCholeskySolveCholTo(t *testing.T) {
   158  	t.Parallel()
   159  	for _, test := range []struct {
   160  		a, b *SymDense
   161  	}{
   162  		{
   163  			a: NewSymDense(2, []float64{
   164  				1, 0,
   165  				0, 1,
   166  			}),
   167  			b: NewSymDense(2, []float64{
   168  				1, 0,
   169  				0, 1,
   170  			}),
   171  		},
   172  		{
   173  			a: NewSymDense(2, []float64{
   174  				1, 0,
   175  				0, 1,
   176  			}),
   177  			b: NewSymDense(2, []float64{
   178  				2, 0,
   179  				0, 2,
   180  			}),
   181  		},
   182  		{
   183  			a: NewSymDense(3, []float64{
   184  				53, 59, 37,
   185  				59, 83, 71,
   186  				37, 71, 101,
   187  			}),
   188  			b: NewSymDense(3, []float64{
   189  				2, -1, 0,
   190  				-1, 2, -1,
   191  				0, -1, 2,
   192  			}),
   193  		},
   194  	} {
   195  		var chola, cholb Cholesky
   196  		ok := chola.Factorize(test.a)
   197  		if !ok {
   198  			t.Fatal("unexpected Cholesky factorization failure for a: not positive definite")
   199  		}
   200  		ok = cholb.Factorize(test.b)
   201  		if !ok {
   202  			t.Fatal("unexpected Cholesky factorization failure for b: not positive definite")
   203  		}
   204  
   205  		var x Dense
   206  		err := chola.SolveCholTo(&x, &cholb)
   207  		if err != nil {
   208  			t.Errorf("unexpected error from Cholesky solve: %v", err)
   209  		}
   210  
   211  		var ans Dense
   212  		ans.Mul(test.a, &x)
   213  		if !EqualApprox(&ans, test.b, 1e-12) {
   214  			var y Dense
   215  			err := y.Solve(test.a, test.b)
   216  			if err != nil {
   217  				t.Errorf("unexpected error from dense solve: %v", err)
   218  			}
   219  			t.Errorf("incorrect Cholesky solve solution product\ngot solution:\n%.4v\nwant solution\n%.4v",
   220  				Formatted(&x), Formatted(&y))
   221  		}
   222  	}
   223  }
   224  
   225  func TestCholeskySolveVecTo(t *testing.T) {
   226  	t.Parallel()
   227  	for _, test := range []struct {
   228  		a   *SymDense
   229  		b   *VecDense
   230  		ans *VecDense
   231  	}{
   232  		{
   233  			a: NewSymDense(2, []float64{
   234  				1, 0,
   235  				0, 1,
   236  			}),
   237  			b:   NewVecDense(2, []float64{5, 6}),
   238  			ans: NewVecDense(2, []float64{5, 6}),
   239  		},
   240  		{
   241  			a: NewSymDense(3, []float64{
   242  				53, 59, 37,
   243  				0, 83, 71,
   244  				0, 0, 101,
   245  			}),
   246  			b:   NewVecDense(3, []float64{5, 6, 7}),
   247  			ans: NewVecDense(3, []float64{0.20745069393718094, -0.17421475529583694, 0.11577794010226464}),
   248  		},
   249  	} {
   250  		var chol Cholesky
   251  		ok := chol.Factorize(test.a)
   252  		if !ok {
   253  			t.Fatal("unexpected Cholesky factorization failure: not positive definite")
   254  		}
   255  
   256  		var x VecDense
   257  		err := chol.SolveVecTo(&x, test.b)
   258  		if err != nil {
   259  			t.Errorf("unexpected error from Cholesky solve: %v", err)
   260  		}
   261  		if !EqualApprox(&x, test.ans, 1e-12) {
   262  			t.Error("incorrect Cholesky solve solution")
   263  		}
   264  
   265  		var ans VecDense
   266  		ans.MulVec(test.a, &x)
   267  		if !EqualApprox(&ans, test.b, 1e-12) {
   268  			t.Error("incorrect Cholesky solve solution product")
   269  		}
   270  	}
   271  }
   272  
   273  func TestCholeskyToSym(t *testing.T) {
   274  	t.Parallel()
   275  	for _, test := range []*SymDense{
   276  		NewSymDense(3, []float64{
   277  			53, 59, 37,
   278  			0, 83, 71,
   279  			0, 0, 101,
   280  		}),
   281  	} {
   282  		var chol Cholesky
   283  		ok := chol.Factorize(test)
   284  		if !ok {
   285  			t.Fatal("unexpected Cholesky factorization failure: not positive definite")
   286  		}
   287  		var s SymDense
   288  		chol.ToSym(&s)
   289  
   290  		if !EqualApprox(&s, test, 1e-12) {
   291  			t.Errorf("Cholesky reconstruction not equal to original matrix.\nWant:\n% v\nGot:\n% v\n", Formatted(test), Formatted(&s))
   292  		}
   293  	}
   294  }
   295  
   296  func TestCloneCholesky(t *testing.T) {
   297  	t.Parallel()
   298  	for _, test := range []*SymDense{
   299  		NewSymDense(3, []float64{
   300  			53, 59, 37,
   301  			0, 83, 71,
   302  			0, 0, 101,
   303  		}),
   304  	} {
   305  		var chol Cholesky
   306  		ok := chol.Factorize(test)
   307  		if !ok {
   308  			panic("bad test")
   309  		}
   310  		var chol2 Cholesky
   311  		chol2.Clone(&chol)
   312  
   313  		if chol.cond != chol2.cond {
   314  			t.Errorf("condition number mismatch from empty")
   315  		}
   316  		if !Equal(chol.chol, chol2.chol) {
   317  			t.Errorf("chol mismatch from empty")
   318  		}
   319  
   320  		// Corrupt chol2 and try again
   321  		chol2.cond = math.NaN()
   322  		chol2.chol = NewTriDense(2, Upper, nil)
   323  		chol2.Clone(&chol)
   324  		if chol.cond != chol2.cond {
   325  			t.Errorf("condition number mismatch from non-empty")
   326  		}
   327  		if !Equal(chol.chol, chol2.chol) {
   328  			t.Errorf("chol mismatch from non-empty")
   329  		}
   330  	}
   331  }
   332  
   333  func TestCholeskyInverseTo(t *testing.T) {
   334  	t.Parallel()
   335  	rnd := rand.New(rand.NewSource(1))
   336  	for _, n := range []int{1, 3, 5, 9} {
   337  		data := make([]float64, n*n)
   338  		for i := range data {
   339  			data[i] = rnd.NormFloat64()
   340  		}
   341  		var s SymDense
   342  		s.SymOuterK(1, NewDense(n, n, data))
   343  
   344  		var chol Cholesky
   345  		ok := chol.Factorize(&s)
   346  		if !ok {
   347  			t.Errorf("Bad test, cholesky decomposition failed")
   348  		}
   349  
   350  		var sInv SymDense
   351  		err := chol.InverseTo(&sInv)
   352  		if err != nil {
   353  			t.Errorf("unexpected error from Cholesky inverse: %v", err)
   354  		}
   355  
   356  		var ans Dense
   357  		ans.Mul(&sInv, &s)
   358  		if !equalApprox(eye(n), &ans, 1e-8, false) {
   359  			var diff Dense
   360  			diff.Sub(eye(n), &ans)
   361  			t.Errorf("SymDense times Cholesky inverse not identity. Norm diff = %v", Norm(&diff, 2))
   362  		}
   363  	}
   364  }
   365  
   366  func TestCholeskySymRankOne(t *testing.T) {
   367  	t.Parallel()
   368  	rnd := rand.New(rand.NewSource(1))
   369  	for _, n := range []int{1, 2, 3, 4, 5, 7, 10, 20, 50, 100} {
   370  		for k := 0; k < 50; k++ {
   371  			// Construct a random positive definite matrix.
   372  			data := make([]float64, n*n)
   373  			for i := range data {
   374  				data[i] = rnd.NormFloat64()
   375  			}
   376  			var a SymDense
   377  			a.SymOuterK(1, NewDense(n, n, data))
   378  
   379  			// Construct random data for updating.
   380  			xdata := make([]float64, n)
   381  			for i := range xdata {
   382  				xdata[i] = rnd.NormFloat64()
   383  			}
   384  			x := NewVecDense(n, xdata)
   385  			alpha := rnd.NormFloat64()
   386  
   387  			// Compute the updated matrix directly. If alpha > 0, there are no
   388  			// issues. If alpha < 0, it could be that the final matrix is not
   389  			// positive definite, so instead switch the two matrices.
   390  			aUpdate := NewSymDense(n, nil)
   391  			if alpha > 0 {
   392  				aUpdate.SymRankOne(&a, alpha, x)
   393  			} else {
   394  				aUpdate.CopySym(&a)
   395  				a.Reset()
   396  				a.SymRankOne(aUpdate, -alpha, x)
   397  			}
   398  
   399  			// Compare the Cholesky decomposition computed with Cholesky.SymRankOne
   400  			// with that computed from updating A directly.
   401  			var chol Cholesky
   402  			ok := chol.Factorize(&a)
   403  			if !ok {
   404  				t.Errorf("Bad random test, Cholesky factorization failed")
   405  				continue
   406  			}
   407  
   408  			var cholUpdate Cholesky
   409  			ok = cholUpdate.SymRankOne(&chol, alpha, x)
   410  			if !ok {
   411  				t.Errorf("n=%v, alpha=%v: unexpected failure", n, alpha)
   412  				continue
   413  			}
   414  
   415  			var aCompare SymDense
   416  			cholUpdate.ToSym(&aCompare)
   417  			if !EqualApprox(&aCompare, aUpdate, 1e-13) {
   418  				t.Errorf("n=%v, alpha=%v: mismatch between updated matrix and from Cholesky:\nupdated:\n%v\nfrom Cholesky:\n%v",
   419  					n, alpha, Formatted(aUpdate), Formatted(&aCompare))
   420  			}
   421  		}
   422  	}
   423  
   424  	for i, test := range []struct {
   425  		a     *SymDense
   426  		alpha float64
   427  		x     []float64
   428  
   429  		wantOk bool
   430  	}{
   431  		{
   432  			// Update (to positive definite matrix).
   433  			a: NewSymDense(4, []float64{
   434  				1, 1, 1, 1,
   435  				0, 2, 3, 4,
   436  				0, 0, 6, 10,
   437  				0, 0, 0, 20,
   438  			}),
   439  			alpha:  1,
   440  			x:      []float64{0, 0, 0, 1},
   441  			wantOk: true,
   442  		},
   443  		{
   444  			// Downdate to singular matrix.
   445  			a: NewSymDense(4, []float64{
   446  				1, 1, 1, 1,
   447  				0, 2, 3, 4,
   448  				0, 0, 6, 10,
   449  				0, 0, 0, 20,
   450  			}),
   451  			alpha:  -1,
   452  			x:      []float64{0, 0, 0, 1},
   453  			wantOk: false,
   454  		},
   455  		{
   456  			// Downdate to positive definite matrix.
   457  			a: NewSymDense(4, []float64{
   458  				1, 1, 1, 1,
   459  				0, 2, 3, 4,
   460  				0, 0, 6, 10,
   461  				0, 0, 0, 20,
   462  			}),
   463  			alpha:  -1 / 2,
   464  			x:      []float64{0, 0, 0, 1},
   465  			wantOk: true,
   466  		},
   467  		{
   468  			// Issue #453.
   469  			a:      NewSymDense(1, []float64{1}),
   470  			alpha:  -1,
   471  			x:      []float64{0.25},
   472  			wantOk: true,
   473  		},
   474  	} {
   475  		var chol Cholesky
   476  		ok := chol.Factorize(test.a)
   477  		if !ok {
   478  			t.Errorf("Case %v: bad test, Cholesky factorization failed", i)
   479  			continue
   480  		}
   481  
   482  		x := NewVecDense(len(test.x), test.x)
   483  		ok = chol.SymRankOne(&chol, test.alpha, x)
   484  		if !ok {
   485  			if test.wantOk {
   486  				t.Errorf("Case %v: unexpected failure from SymRankOne", i)
   487  			}
   488  			continue
   489  		}
   490  		if ok && !test.wantOk {
   491  			t.Errorf("Case %v: expected a failure from SymRankOne", i)
   492  		}
   493  
   494  		a := test.a
   495  		a.SymRankOne(a, test.alpha, x)
   496  
   497  		var achol SymDense
   498  		chol.ToSym(&achol)
   499  		if !EqualApprox(&achol, a, 1e-13) {
   500  			t.Errorf("Case %v: mismatch between updated matrix and from Cholesky:\nupdated:\n%v\nfrom Cholesky:\n%v",
   501  				i, Formatted(a), Formatted(&achol))
   502  		}
   503  	}
   504  }
   505  
   506  func TestCholeskyExtendVecSym(t *testing.T) {
   507  	t.Parallel()
   508  	for cas, test := range []struct {
   509  		a *SymDense
   510  	}{
   511  		{
   512  			a: NewSymDense(3, []float64{
   513  				4, 1, 1,
   514  				0, 2, 3,
   515  				0, 0, 6,
   516  			}),
   517  		},
   518  	} {
   519  		n := test.a.SymmetricDim()
   520  		as := test.a.sliceSym(0, n-1)
   521  
   522  		// Compute the full factorization to use later (do the full factorization
   523  		// first to ensure the matrix is positive definite).
   524  		var cholFull Cholesky
   525  		ok := cholFull.Factorize(test.a)
   526  		if !ok {
   527  			panic("mat: bad test, matrix not positive definite")
   528  		}
   529  
   530  		var chol Cholesky
   531  		ok = chol.Factorize(as)
   532  		if !ok {
   533  			panic("mat: bad test, subset is not positive definite")
   534  		}
   535  		row := NewVecDense(n, nil)
   536  		for i := 0; i < n; i++ {
   537  			row.SetVec(i, test.a.At(n-1, i))
   538  		}
   539  
   540  		var cholNew Cholesky
   541  		ok = cholNew.ExtendVecSym(&chol, row)
   542  		if !ok {
   543  			t.Errorf("cas %v: update not positive definite", cas)
   544  		}
   545  		var a SymDense
   546  		cholNew.ToSym(&a)
   547  		if !EqualApprox(&a, test.a, 1e-12) {
   548  			t.Errorf("cas %v: mismatch", cas)
   549  		}
   550  
   551  		// test in-place
   552  		ok = chol.ExtendVecSym(&chol, row)
   553  		if !ok {
   554  			t.Errorf("cas %v: in-place update not positive definite", cas)
   555  		}
   556  		if !equalChol(&chol, &cholNew) {
   557  			t.Errorf("cas %v: Cholesky different in-place vs. new", cas)
   558  		}
   559  
   560  		// Test that the factorization is about right compared with the direct
   561  		// full factorization. Use a high tolerance on the condition number
   562  		// since the condition number with the updated rule is approximate.
   563  		if !equalApproxChol(&chol, &cholFull, 1e-12, 0.3) {
   564  			t.Errorf("cas %v: updated Cholesky does not match full", cas)
   565  		}
   566  	}
   567  }
   568  
   569  func TestCholeskyScale(t *testing.T) {
   570  	t.Parallel()
   571  	for cas, test := range []struct {
   572  		a *SymDense
   573  		f float64
   574  	}{
   575  		{
   576  			a: NewSymDense(3, []float64{
   577  				4, 1, 1,
   578  				0, 2, 3,
   579  				0, 0, 6,
   580  			}),
   581  			f: 0.5,
   582  		},
   583  	} {
   584  		var chol Cholesky
   585  		ok := chol.Factorize(test.a)
   586  		if !ok {
   587  			t.Errorf("Case %v: bad test, Cholesky factorization failed", cas)
   588  			continue
   589  		}
   590  
   591  		// Compare the update to a new Cholesky to an update in-place.
   592  		var cholUpdate Cholesky
   593  		cholUpdate.Scale(test.f, &chol)
   594  		chol.Scale(test.f, &chol)
   595  		if !equalChol(&chol, &cholUpdate) {
   596  			t.Errorf("Case %d: cholesky mismatch new receiver", cas)
   597  		}
   598  		var sym SymDense
   599  		chol.ToSym(&sym)
   600  		var comp SymDense
   601  		comp.ScaleSym(test.f, test.a)
   602  		if !EqualApprox(&comp, &sym, 1e-14) {
   603  			t.Errorf("Case %d: cholesky reconstruction doesn't match scaled matrix", cas)
   604  		}
   605  
   606  		var cholTest Cholesky
   607  		cholTest.Factorize(&comp)
   608  		if !equalApproxChol(&cholTest, &chol, 1e-12, 1e-12) {
   609  			t.Errorf("Case %d: cholesky mismatch with scaled matrix. %v, %v", cas, cholTest.cond, chol.cond)
   610  		}
   611  	}
   612  }
   613  
   614  // equalApproxChol checks that the two Cholesky decompositions are equal.
   615  func equalChol(a, b *Cholesky) bool {
   616  	return Equal(a.chol, b.chol) && a.cond == b.cond
   617  }
   618  
   619  // equalApproxChol checks that the two Cholesky decompositions are approximately
   620  // the same with the given tolerance on equality for the Triangular component and
   621  // condition.
   622  func equalApproxChol(a, b *Cholesky, matTol, condTol float64) bool {
   623  	if !EqualApprox(a.chol, b.chol, matTol) {
   624  		return false
   625  	}
   626  	return scalar.EqualWithinAbsOrRel(a.cond, b.cond, condTol, condTol)
   627  }
   628  
   629  func BenchmarkCholeskyFactorize(b *testing.B) {
   630  	for _, n := range []int{10, 100, 1000} {
   631  		b.Run("n="+strconv.Itoa(n), func(b *testing.B) {
   632  			rnd := rand.New(rand.NewSource(1))
   633  
   634  			data := make([]float64, n*n)
   635  			for i := range data {
   636  				data[i] = rnd.NormFloat64()
   637  			}
   638  			var a SymDense
   639  			a.SymOuterK(1, NewDense(n, n, data))
   640  
   641  			var chol Cholesky
   642  			b.ResetTimer()
   643  			for i := 0; i < b.N; i++ {
   644  				ok := chol.Factorize(&a)
   645  				if !ok {
   646  					panic("not positive definite")
   647  				}
   648  			}
   649  		})
   650  	}
   651  }
   652  
   653  func BenchmarkCholeskyToSym(b *testing.B) {
   654  	for _, n := range []int{10, 100, 1000} {
   655  		b.Run("n="+strconv.Itoa(n), func(b *testing.B) {
   656  			rnd := rand.New(rand.NewSource(1))
   657  
   658  			data := make([]float64, n*n)
   659  			for i := range data {
   660  				data[i] = rnd.NormFloat64()
   661  			}
   662  			var a SymDense
   663  			a.SymOuterK(1, NewDense(n, n, data))
   664  
   665  			var chol Cholesky
   666  			ok := chol.Factorize(&a)
   667  			if !ok {
   668  				panic("not positive definite")
   669  			}
   670  
   671  			dst := NewSymDense(n, nil)
   672  
   673  			b.ResetTimer()
   674  			for i := 0; i < b.N; i++ {
   675  				chol.ToSym(dst)
   676  			}
   677  		})
   678  	}
   679  }
   680  
   681  func BenchmarkCholeskyInverseTo(b *testing.B) {
   682  	for _, n := range []int{10, 100, 1000} {
   683  		b.Run("n="+strconv.Itoa(n), func(b *testing.B) {
   684  			rnd := rand.New(rand.NewSource(1))
   685  
   686  			data := make([]float64, n*n)
   687  			for i := range data {
   688  				data[i] = rnd.NormFloat64()
   689  			}
   690  			var a SymDense
   691  			a.SymOuterK(1, NewDense(n, n, data))
   692  
   693  			var chol Cholesky
   694  			ok := chol.Factorize(&a)
   695  			if !ok {
   696  				panic("not positive definite")
   697  			}
   698  
   699  			dst := NewSymDense(n, nil)
   700  
   701  			b.ResetTimer()
   702  			for i := 0; i < b.N; i++ {
   703  				err := chol.InverseTo(dst)
   704  				if err != nil {
   705  					b.Fatalf("unexpected error from Cholesky inverse: %v", err)
   706  				}
   707  			}
   708  		})
   709  	}
   710  }
   711  
   712  func TestBandCholeskySolveTo(t *testing.T) {
   713  	t.Parallel()
   714  
   715  	const (
   716  		nrhs = 4
   717  		tol  = 1e-14
   718  	)
   719  	rnd := rand.New(rand.NewSource(1))
   720  	for _, n := range []int{1, 2, 3, 5, 10} {
   721  		for _, k := range []int{0, 1, n / 2, n - 1} {
   722  			k := min(k, n-1)
   723  
   724  			a := NewSymBandDense(n, k, nil)
   725  			for i := 0; i < n; i++ {
   726  				a.SetSymBand(i, i, rnd.Float64()+float64(n))
   727  				for j := i + 1; j < min(i+k+1, n); j++ {
   728  					a.SetSymBand(i, j, rnd.Float64())
   729  				}
   730  			}
   731  
   732  			want := NewDense(n, nrhs, nil)
   733  			for i := 0; i < n; i++ {
   734  				for j := 0; j < nrhs; j++ {
   735  					want.Set(i, j, rnd.NormFloat64())
   736  				}
   737  			}
   738  			var b Dense
   739  			b.Mul(a, want)
   740  
   741  			for _, typ := range []SymBanded{a, (*basicSymBanded)(a)} {
   742  				name := fmt.Sprintf("Case n=%d,k=%d,type=%T,nrhs=%d", n, k, typ, nrhs)
   743  
   744  				var chol BandCholesky
   745  				ok := chol.Factorize(typ)
   746  				if !ok {
   747  					t.Fatalf("%v: Factorize failed", name)
   748  				}
   749  
   750  				var got Dense
   751  				err := chol.SolveTo(&got, &b)
   752  				if err != nil {
   753  					t.Errorf("%v: unexpected error from SolveTo: %v", name, err)
   754  					continue
   755  				}
   756  
   757  				var resid Dense
   758  				resid.Sub(want, &got)
   759  				diff := Norm(&resid, math.Inf(1))
   760  				if diff > tol {
   761  					t.Errorf("%v: unexpected solution; diff=%v", name, diff)
   762  				}
   763  
   764  				got.Copy(&b)
   765  				err = chol.SolveTo(&got, &got)
   766  				if err != nil {
   767  					t.Errorf("%v: unexpected error from SolveTo when dst==b: %v", name, err)
   768  					continue
   769  				}
   770  
   771  				resid.Sub(want, &got)
   772  				diff = Norm(&resid, math.Inf(1))
   773  				if diff > tol {
   774  					t.Errorf("%v: unexpected solution when dst==b; diff=%v", name, diff)
   775  				}
   776  			}
   777  		}
   778  	}
   779  }
   780  
   781  func TestBandCholeskySolveVecTo(t *testing.T) {
   782  	t.Parallel()
   783  
   784  	const tol = 1e-14
   785  	rnd := rand.New(rand.NewSource(1))
   786  	for _, n := range []int{1, 2, 3, 5, 10} {
   787  		for _, k := range []int{0, 1, n / 2, n - 1} {
   788  			k := min(k, n-1)
   789  
   790  			a := NewSymBandDense(n, k, nil)
   791  			for i := 0; i < n; i++ {
   792  				a.SetSymBand(i, i, rnd.Float64()+float64(n))
   793  				for j := i + 1; j < min(i+k+1, n); j++ {
   794  					a.SetSymBand(i, j, rnd.Float64())
   795  				}
   796  			}
   797  
   798  			want := NewVecDense(n, nil)
   799  			for i := 0; i < n; i++ {
   800  				want.SetVec(i, rnd.NormFloat64())
   801  			}
   802  			var b VecDense
   803  			b.MulVec(a, want)
   804  
   805  			for _, typ := range []SymBanded{a, (*basicSymBanded)(a)} {
   806  				name := fmt.Sprintf("Case n=%d,k=%d,type=%T", n, k, typ)
   807  
   808  				var chol BandCholesky
   809  				ok := chol.Factorize(typ)
   810  				if !ok {
   811  					t.Fatalf("%v: Factorize failed", name)
   812  				}
   813  
   814  				var got VecDense
   815  				err := chol.SolveVecTo(&got, &b)
   816  				if err != nil {
   817  					t.Errorf("%v: unexpected error from SolveVecTo: %v", name, err)
   818  					continue
   819  				}
   820  
   821  				var resid VecDense
   822  				resid.SubVec(want, &got)
   823  				diff := Norm(&resid, math.Inf(1))
   824  				if diff > tol {
   825  					t.Errorf("%v: unexpected solution; diff=%v", name, diff)
   826  				}
   827  
   828  				got.CopyVec(&b)
   829  				err = chol.SolveVecTo(&got, &got)
   830  				if err != nil {
   831  					t.Errorf("%v: unexpected error from SolveVecTo when dst==b: %v", name, err)
   832  					continue
   833  				}
   834  
   835  				resid.SubVec(want, &got)
   836  				diff = Norm(&resid, math.Inf(1))
   837  				if diff > tol {
   838  					t.Errorf("%v: unexpected solution when dst==b; diff=%v", name, diff)
   839  				}
   840  			}
   841  		}
   842  	}
   843  }
   844  
   845  func TestBandCholeskyAt(t *testing.T) {
   846  	t.Parallel()
   847  
   848  	const tol = 1e-14
   849  	rnd := rand.New(rand.NewSource(1))
   850  	for _, n := range []int{1, 2, 3, 5, 10} {
   851  		for _, k := range []int{0, 1, n / 2, n - 1} {
   852  			k := min(k, n-1)
   853  			name := fmt.Sprintf("Case n=%d,k=%d", n, k)
   854  
   855  			a := NewSymBandDense(n, k, nil)
   856  			for i := 0; i < n; i++ {
   857  				a.SetSymBand(i, i, rnd.Float64()+float64(n))
   858  				for j := i + 1; j < min(i+k+1, n); j++ {
   859  					a.SetSymBand(i, j, rnd.Float64())
   860  				}
   861  			}
   862  
   863  			var chol BandCholesky
   864  			ok := chol.Factorize(a)
   865  			if !ok {
   866  				t.Fatalf("%v: Factorize failed", name)
   867  			}
   868  
   869  			resid := NewDense(n, n, nil)
   870  			for i := 0; i < n; i++ {
   871  				for j := 0; j < n; j++ {
   872  					resid.Set(i, j, math.Abs(a.At(i, j)-chol.At(i, j)))
   873  				}
   874  			}
   875  			diff := Norm(resid, math.Inf(1))
   876  			if diff > tol {
   877  				t.Errorf("%v: unexpected result; diff=%v, want<=%v", name, diff, tol)
   878  			}
   879  		}
   880  	}
   881  }
   882  
   883  func TestBandCholeskyDet(t *testing.T) {
   884  	t.Parallel()
   885  
   886  	const tol = 1e-14
   887  	rnd := rand.New(rand.NewSource(1))
   888  	for _, n := range []int{1, 2, 3, 5, 10} {
   889  		for _, k := range []int{0, 1, n / 2, n - 1} {
   890  			k := min(k, n-1)
   891  			name := fmt.Sprintf("Case n=%d,k=%d", n, k)
   892  
   893  			a := NewSymBandDense(n, k, nil)
   894  			aSym := NewSymDense(n, nil)
   895  			for i := 0; i < n; i++ {
   896  				aii := rnd.Float64() + float64(n)
   897  				a.SetSymBand(i, i, aii)
   898  				aSym.SetSym(i, i, aii)
   899  				for j := i + 1; j < min(i+k+1, n); j++ {
   900  					aij := rnd.Float64()
   901  					a.SetSymBand(i, j, aij)
   902  					aSym.SetSym(i, j, aij)
   903  				}
   904  			}
   905  
   906  			var chol BandCholesky
   907  			ok := chol.Factorize(a)
   908  			if !ok {
   909  				t.Fatalf("%v: Factorize failed", name)
   910  			}
   911  
   912  			var cholDense Cholesky
   913  			ok = cholDense.Factorize(aSym)
   914  			if !ok {
   915  				t.Fatalf("%v: dense Factorize failed", name)
   916  			}
   917  
   918  			want := cholDense.Det()
   919  			got := chol.Det()
   920  			diff := math.Abs(got - want)
   921  			if diff > tol {
   922  				t.Errorf("%v: unexpected result; got=%v, want=%v (diff=%v)", name, got, want, diff)
   923  			}
   924  		}
   925  	}
   926  }