github.com/vertgenlab/gonomics@v1.0.0/genomeGraph/dotFormat_test.go (about)

     1  package genomeGraph
     2  
     3  //"github.com/vertgenlab/gonomics/dna"
     4  //"github.com/vertgenlab/gonomics/fastq"
     5  //"log"
     6  //"testing"
     7  
     8  //TODO: consider dot format to graph
     9  //     --> node_1            --> node_4
    10  //node_0          --> node_3             --> node_6
    11  //     --> node_2           -->  node_5
    12  
    13  //TODO: The function this tests has been temporarily removed since it is not being used now and will need
    14  // some modifications
    15  /*
    16  func TestDotFormat(t *testing.T) {
    17  	gg := DotToGraph("testdata/dotFormat/seed_test.dot")
    18  	var hippo *fastq.Fastq = &fastq.Fastq{Name: "hippoOne", Seq: dna.StringToBases("CCCATTCTTCCCTCCACAAGATCCAGATCCCCGTGTTTGGACCCCATAAGAATGAGAAGAATCCTCTCCGGTTTTGTTATCTGTTCTGAATGTGAAACTGGGATATCCACGTTGATCTCGGCTAAAATATAACAAACCTAAACAATTTGA"), Qual: fastq.ToQualUint8([]rune("JJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJJ"))}
    19  	seed := &SeedDev{TargetId: 3, TargetStart: 0, QueryStart: 23, Length: 10}
    20  	hits := extendSeedTogether(seed, gg, hippo)
    21  	printSeedDev(hits)
    22  	log.Printf("Number of expanded seeds is: %d", len(hits))
    23  
    24  }*/