github.com/vlifesystems/rulehunter@v0.0.0-20180501090014-673078aa4a83/examples/experiments/breast_cancer_wisconsin_malignant.yaml (about)

     1  title: "Which breast tumours are malignant?"
     2  category: "medical"
     3  tags:
     4    - breast cancer
     5    - cancer
     6    - wisconsin
     7  train:
     8    dataset:
     9      csv:
    10        filename: "csv/breast_cancer_wisconsin.csv"
    11        hasHeader: true
    12        separator: ","
    13      fields:
    14        - id
    15        - diagnosis
    16        - radius_mean
    17        - texture_mean
    18        - perimeter_mean
    19        - area_mean
    20        - smoothness_mean
    21        - compactness_mean
    22        - concavity_mean
    23        - concave_points_mean
    24        - symmetry_mean
    25        - fractal_dimension_mean
    26        - radius_se
    27        - texture_se
    28        - perimeter_se
    29        - area_se
    30        - smoothness_se
    31        - compactness_se
    32        - concavity_se
    33        - concave_points_se
    34        - symmetry_se
    35        - fractal_dimension_se
    36        - radius_worst
    37        - texture_worst
    38        - perimeter_worst
    39        - area_worst
    40        - smoothness_worst
    41        - compactness_worst
    42        - concavity_worst
    43        - concave_points_worst
    44        - symmetry_worst
    45        - fractal_dimension_worst
    46    when: "!hasRun"
    47    ruleGeneration:
    48      fields:
    49        - radius_mean
    50        - texture_mean
    51        - perimeter_mean
    52        - area_mean
    53        - smoothness_mean
    54        - compactness_mean
    55        - concavity_mean
    56        - concave_points_mean
    57        - symmetry_mean
    58        - fractal_dimension_mean
    59        - radius_se
    60        - texture_se
    61        - perimeter_se
    62        - area_se
    63        - smoothness_se
    64        - compactness_se
    65        - concavity_se
    66        - concave_points_se
    67        - symmetry_se
    68        - fractal_dimension_se
    69        - radius_worst
    70        - texture_worst
    71        - perimeter_worst
    72        - area_worst
    73        - smoothness_worst
    74        - compactness_worst
    75        - concavity_worst
    76        - concave_points_worst
    77        - symmetry_worst
    78        - fractal_dimension_worst
    79      arithmetic: true
    80      combinationLength: 1
    81  aggregators:
    82    - name: "mccIsMalignant"
    83      kind: "mcc"
    84      arg: "diagnosis == \"M\""
    85    - name: "numAreBenign"
    86      kind: "count"
    87      arg: "diagnosis == \"B\""
    88    - name: "numAreMalignant"
    89      kind: "count"
    90      arg: "diagnosis == \"M\""
    91    - name: "recallIsMalignant"
    92      kind: "recall"
    93      arg: "diagnosis == \"M\""
    94    - name: "precisionIsMalignant"
    95      kind: "precision"
    96      arg: "diagnosis == \"M\""
    97  sortOrder:
    98    - aggregator: "mccIsMalignant"
    99      direction: "descending"