golang.org/x/exp@v0.0.0-20240506185415-9bf2ced13842/shootout/regex-dna.go (about)

     1  //go:build ignore
     2  // +build ignore
     3  
     4  /*
     5  Redistribution and use in source and binary forms, with or without
     6  modification, are permitted provided that the following conditions are met:
     7  
     8      * Redistributions of source code must retain the above copyright
     9      notice, this list of conditions and the following disclaimer.
    10  
    11      * Redistributions in binary form must reproduce the above copyright
    12      notice, this list of conditions and the following disclaimer in the
    13      documentation and/or other materials provided with the distribution.
    14  
    15      * Neither the name of "The Computer Language Benchmarks Game" nor the
    16      name of "The Computer Language Shootout Benchmarks" nor the names of
    17      its contributors may be used to endorse or promote products derived
    18      from this software without specific prior written permission.
    19  
    20  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
    21  AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
    22  IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
    23  ARE DISCLAIMED.  IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
    24  LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
    25  CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
    26  SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
    27  INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
    28  CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
    29  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
    30  POSSIBILITY OF SUCH DAMAGE.
    31  */
    32  
    33  /* The Computer Language Benchmarks Game
    34   * http://shootout.alioth.debian.org/
    35   *
    36   * contributed by The Go Authors.
    37   */
    38  
    39  package main
    40  
    41  import (
    42  	"fmt"
    43  	"io"
    44  	"os"
    45  	"regexp"
    46  )
    47  
    48  var variants = []string{
    49  	"agggtaaa|tttaccct",
    50  	"[cgt]gggtaaa|tttaccc[acg]",
    51  	"a[act]ggtaaa|tttacc[agt]t",
    52  	"ag[act]gtaaa|tttac[agt]ct",
    53  	"agg[act]taaa|ttta[agt]cct",
    54  	"aggg[acg]aaa|ttt[cgt]ccct",
    55  	"agggt[cgt]aa|tt[acg]accct",
    56  	"agggta[cgt]a|t[acg]taccct",
    57  	"agggtaa[cgt]|[acg]ttaccct",
    58  }
    59  
    60  type Subst struct {
    61  	pat, repl string
    62  }
    63  
    64  var substs = []Subst{
    65  	Subst{"B", "(c|g|t)"},
    66  	Subst{"D", "(a|g|t)"},
    67  	Subst{"H", "(a|c|t)"},
    68  	Subst{"K", "(g|t)"},
    69  	Subst{"M", "(a|c)"},
    70  	Subst{"N", "(a|c|g|t)"},
    71  	Subst{"R", "(a|g)"},
    72  	Subst{"S", "(c|g)"},
    73  	Subst{"V", "(a|c|g)"},
    74  	Subst{"W", "(a|t)"},
    75  	Subst{"Y", "(c|t)"},
    76  }
    77  
    78  func countMatches(pat string, bytes []byte) int {
    79  	re := regexp.MustCompile(pat)
    80  	n := 0
    81  	for {
    82  		e := re.FindIndex(bytes)
    83  		if len(e) == 0 {
    84  			break
    85  		}
    86  		n++
    87  		bytes = bytes[e[1]:]
    88  	}
    89  	return n
    90  }
    91  
    92  func main() {
    93  	bytes, err := io.ReadAll(os.Stdin)
    94  	if err != nil {
    95  		fmt.Fprintf(os.Stderr, "can't read input: %s\n", err)
    96  		os.Exit(2)
    97  	}
    98  	ilen := len(bytes)
    99  	// Delete the comment lines and newlines
   100  	bytes = regexp.MustCompile("(>[^\n]+)?\n").ReplaceAll(bytes, []byte{})
   101  	clen := len(bytes)
   102  	for _, s := range variants {
   103  		fmt.Printf("%s %d\n", s, countMatches(s, bytes))
   104  	}
   105  	for _, sub := range substs {
   106  		bytes = regexp.MustCompile(sub.pat).ReplaceAll(bytes, []byte(sub.repl))
   107  	}
   108  	fmt.Printf("\n%d\n%d\n%d\n", ilen, clen, len(bytes))
   109  }